Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs76897509 chr16:90140204 C/G 9.9E-9 175 25.87 20.2 6.62 KM Plot
PCPG rs76924017 chr16:89856702 G/A 0.000165 175 25.87 21.5 36.37 KM Plot
PCPG rs76937830 chr6:138867142 G/A 0.000174 175 25.28 32.32 3.17 KM Plot
PCPG rs76942258 chr18:51790217 C/T 3.95E-11 177 25.17 34.73 10.3 KM Plot
PCPG rs7697 chr14:74667841 A/G 5.98E-7 173 25.47 27.75 10.3 KM Plot
PCPG rs76995310 chr2:24322874 T/C 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs77021063 chr15:31044204 T/C 0 176 25.87 23.43 2.12 KM Plot
PCPG rs77023162 chr2:176147390 A/T 0.000152 174 25.4 28.47 6.62 KM Plot
PCPG rs77032009 chr12:56679971 A/G 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs7706887 chr5:178239484 T/G 6.76E-5 178 25.87 25.67 15.25 KM Plot
PCPG rs7707245 chr5:171546731 A/G 0.000254 175 25.35 19.87 NA KM Plot
PCPG rs77094909 chr2:176163995 A/G 0.000115 178 25.28 28.95 6.62 KM Plot
PCPG rs77120931 chr12:56646213 A/C 1.09E-7 177 25.17 27.33 0.8 KM Plot
PCPG rs77125238 chr8:121440388 C/A 4.06E-6 178 27.2 25.33 19.87 KM Plot
PCPG rs77128035 chr22:50241024 C/T 0.000161 176 25.6 20.17 15.18 KM Plot